miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|72736991|gb|DT151511.1|DT151511 TGTCGATGGAGGATCCTTTTTTCGTGGTTAAAGGGGAGGTGCAGAAGGCCCTGTCTAAAGCACAGGGGCTGTTTGAGCGC
TGGGAGGAGCTGCTGCAGGAAGAAACACCCGTCAGTCGCGATGAGCTGGACTGGAGCACCAATGAACTCCGAAACTGCCT
AAGGGCCATCGACTGGGACCTAGAGGACCTGCATGAAACCATCAGTATTGTGGAGGCAAACCCTGGAAAGTTCCGTTTAG
GGGAATATGAACTCCAGGAGAGGCAGGAATTTGTGGCGCGAACACGGAATTCTGTGCAGATGATGAAAGAGCAGCTTGCT
AGCCCCTCAGCTGTGGCCCAAGCAGAGAAGAAAAACAGACAGGCTCTGCTGGGGGCCACAGCAAAGGATCGCTACGCCGG
TCTAGAGCCTCACCTGGTGTCTGCAAACTCCAGATACATTCAGGAGCAACAGGAACAGCAGCAGCTGATCATGCAGGACC
AGGATGAGCACTTGGAGCTGGTCACAGGCAGTATCCGTGTCCTGAAGGACATGTCTAGCAGGATAGGAGACGAGCTGGAT
GAACAGGCAGTTATGCTCGGGGAGTTTAGTGAGGAGATGGACCAGACCGGTTCTAGAATGGACTCAGTGTTGAAGAAAAT
GGAGAAGGTTTCACACATGACCAGCAGTCGGAGACAGTGGTGTGCTATCGGAGTTCTTGTAATCATACTGATCGTGGTGC
TTATTTTGTTCTTTGCCATTTAAACCAGACTCTTCTTCGGTTTGGCCCTCTATCATGCCAAAAGCTTACA




Most similar to sp|O60499|STX10_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O60499|STX10_HUMAN Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1
           SV=1
          Length = 249

 Score =  259 bits (663), Expect = 1e-68
 Identities = 134/231 (58%), Positives = 166/231 (71%), Gaps = 2/231 (0%)
 Frame = +3

Query: 3   SMEDPFFVVKGEVQKALSKAQGLFERWEELLQEETPVSRDELDWSTNELRNCLRAIDWDL 182
           S+EDPFFVV+GEVQKA++ A+GL++RW ELLQE   V R+ELDW+TNELRN LR+I+WDL
Sbjct: 2   SLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDL 61

Query: 183 EDLHETISIVEANPGKFRLGEYELQERQEFVARTRNSVQMMKEQLASPSAVAQAEKKNRQ 362
           EDL ETI IVEANPGKF+L   +LQER+ FV R R +VQ MK+ + SP+AVA  E+ NR+
Sbjct: 62  EDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMVSPTAVAFLERNNRE 121

Query: 363 ALLGATAKDRYAG--LEPHLVSANSRYXXXXXXXXXXXXXXXXXHLELVTGSIRVLKDMS 536
            L G  A  +     L+   VSA SRY                  LE+V+GSI+VLK MS
Sbjct: 122 ILAGKPAAQKSPSDLLDASAVSATSRYIEEQQATQQLIMDEQDQQLEMVSGSIQVLKHMS 181

Query: 537 SRIGDELDEQAVMLGEFSEEMDQTGSRMDSVLKKMEKVSHMTSSRRQWCAI 689
            R+G+ELDEQ +ML  F++EMD T SRMD VL+K+ KVSHMTS RRQWCAI
Sbjct: 182 GRVGEELDEQGIMLDAFAQEMDHTQSRMDGVLRKLAKVSHMTSDRRQWCAI 232